PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G182400.3
Common NamePHAVU_002G182400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 246aa    MW: 26470.3 Da    PI: 6.676
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G182400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002694116123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Phvul.002G182400.3  94 FSCNYCRRKFYSSQALGGHQNAH 116
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-692122No hitNo description
PROSITE profilePS5015711.38594121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMTPNLNLEP ENHSEGSSQV ASNVSLHEAS YDLTKGSTTT SSCLTKDETD PGSVTLDLTL  60
NFNSSDSELK GSSDASSEVG AEAPASASAT PRVFSCNYCR RKFYSSQALG GHQNAHKRER  120
TMAKRALRMG MFTERYTSLA SLPLHGSPFR SLGLEAHSAM HQRHVPSSLR TPDMRTAARF  180
ERNHFGSLVF MEDDDVGLFW PGSFRQVDQG AGVNEGHVQS SNASVVPIVP PPPQASASPD  240
LTLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158792.10.0hypothetical protein PHAVU_002G182400g
RefseqXP_007158793.10.0hypothetical protein PHAVU_002G182400g
RefseqXP_007158794.10.0hypothetical protein PHAVU_002G182400g
RefseqXP_007158795.10.0hypothetical protein PHAVU_002G182400g
SwissprotQ392635e-43ZFP4_ARATH; Zinc finger protein 4
TrEMBLV7CKT00.0V7CKT0_PHAVU; Uncharacterized protein
STRINGGLYMA05G26990.11e-157(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-44zinc finger protein 4